PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01020_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 249aa    MW: 26183.2 Da    PI: 10.1781
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.53.3e-3650123266
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........s 66 
                             +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++         s
  GSMUA_Achr10P01020_001  50 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKTAIDELAELppwtpsatsS 123
                             79**************************************************************7754432221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-3250114IPR005333Transcription factor, TCP
PROSITE profilePS5136933.84652110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGESYSHQSL FLQQQLQRPV ARSRLGGGGV RGGAVGEIVE VQGGHIVRST GRKDRHSKVC  60
TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KNAKTAIDEL AELPPWTPSA  120
TSSAPPTHDA HFPGSVHGGG CGGGHAFSFP PPQAVPLHSV LGHSQLFSQR GPLQSSNPPA  180
IRAWADPAAA AAAADHRMQP ALHPSISSIG LASGTGFSGF QVPARIQGEE EHDGIITGKP  240
PSASSASRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688638e-74AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818318e-74FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419788.11e-61PREDICTED: transcription factor PCF5-like
SwissprotQ8LPR53e-52TCP4_ARATH; Transcription factor TCP4
TrEMBLM0REC91e-180M0REC9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01020_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-47TCP family protein